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Steve Thompson's abridged bookmark list

 

BioInformatics and the InterNet: the World Wide Web

Some of my favorite sites for molecular biology, biocomputing education, sequence analysis, and general bioinformatics:

Site

URL (Uniform Resource Locator)

Content
     
 

biocomputing servers USA
 

Natnl Cntr Biotech Info

http://www.ncbi.nlm.nih.gov/

databases/analysis/software

PIR/NBRF

http://www-nbrf.georgetown.edu/

protein sequence database

ProteinDataBank

http://www.rcsb.org/pdb/

3D mol structure database

Molecules To Go

http://molbio.info.nih.gov/cgi-bin/pdb

3D biomol visualization

IUBIO Biology Archive

http://iubio.bio.indiana.edu/

database/software archive
     
 

biocomputing servers Canada
 

Univ Montreal MegaSun

http://megasun.bch.umontreal.ca/

database/software archive
     
 

biocomputing servers Japan
 

Japan's GenomeNet Server

http://www.genome.ad.jp/

databases/analysis/software
     
 

biocomputing servers Europe
 

European Mol Bio Lab

http://www.embl-heidelberg.de/

databases/analysis/software

European Bioinfo Lab

http://www.ebi.ac.uk/

databases/analysis/software

The Sanger Institute

http://www.sanger.ac.uk/

databases/analysis/software

Swiss Inst Bioinfo Server

http://www.expasy.ch/

databases/analysis/software
     
 

specifically genomes
 

EBI/Sanger's Ensembl

http://www.ensembl.org/index.html

genome project browser

UCSC Genome Browser

http://genome.ucsc.edu/

genome project browser

DCode & ECR Browser

http://www.dcode.org/

Lawrence Livermore comparative genomics

The Genome DataBase

http://www.gdb.org/

human genome project

Stanford Genomic Resource

http://genome-www.stanford.edu/

various genome projects

Inst for Genomic Research

http://www.tigr.org/

microbial genome projects

HIV Sequence Database

http://hiv-web.lanl.gov/

HIV epidemeology seq DB
     
 

biocomputing tool collections
 

Baylor Search Launcher

http://searchlauncher.bcm.tmc.edu/

sequence search launcher

Pedro's BioMol Rsrch Tools

http://www.biophys.uni-duesseldorf.de/BioNet/Pedro/research_tools.html

extensive bookmark list

Harvard Bio Laboratories

http://golgi.harvard.edu/BioLinks.html

nice biolinks lists

BioToolKit

http://www.biosupplynet.com/cfdocs/btk/btk.cfm

annotated molbio tool links
     
 

molecular evolution
 

Marine Bio Lab Workshop

http://workshop.molecularevolution.org

premiere mol evol course

Felsenstein's PHYLIP site

http://evolution.genetics.washington.edu/phylip.html

phylogenetic inference

The Tree of Life

http://tolweb.org/tree/phylogeny.html

overview of all phylogeny

Ribosomal Database Project

http://rdp.cme.msu.edu

databases/analysis/software
     
 

biosystems integration
 

Metabolism+

http://www-unix.mcs.anl.gov/compbio/default.html

metabolic reconstructions
     
 

how to keep current
 

BIOSCI/BIONET

http://net.bio.net

biologists' news groups
     
 

biology education
 

Access Excellence

http://www.accessexcellence.org/

biology teaching and learning

CELLS alive!

http://www.cellsalive.com/

animated microphotography
     
 

biocomputing education
 

Wentian Li's List

http://www.nslij-genetics.org/bioinfotraining/

sorted geographically

Bielefield List

http://www.techfak.uni-bielefeld.de/bcd/Curric/syllabi.html

sorted by date

UT Austin List

http://biotech.icmb.utexas.edu/pages/bioinform/biprograms_us.html

sorted by degree

Intrntl Soc Comp Bio

http://www.iscb.org/conf_edu.shtml

conferences, courses, programs

Univ Wash CMB

http://depts.washington.edu/cmolbiol/

Doctorate program